structure

    Top: Science: Biology: Biochemistry_and_Molecular_Biology: Biomolecules: Proteins_and_Enzymes: Structure:

• - PSI is a federal, university, and industry effort aiming to reduce the costs and time taken to determine a 3D topology. Includes details of funding and featured publications from Bethesda, Maryland.
  
• - Analysis of proteins and protein dynamics with hydrogen exchange and mass spectrometry from Corrales, NM.
  
• - An attempt to classify all proteins from SWISSPROT and TrEMBL into groups of related proteins.
  
• - Compendium of histone protein sequence alignments, including postranslational modifications and proteins containing the histone fold, at the National Human Genome Research Institute, Bethesda, MD.
  
• - N-glycosylation site prediction in human proteins using artificial neural networks that examine the sequence context of Asn-Xaa-Ser/Thr sequons, from Center for Biological Sequence Analysis, Technical University of Denmark.
  
• - Mission, board members, and bylaws promoting the discovery and exchange of new methods and technique. Includes archivce of meetings, and contacts.
  
• - Advances and archive of meetings on critical assessment of 3D determination from sequence using alignment tools. Maintained at Lawrence Livermore National Laboratory, California.
  
• - Research to provide insights leading to novel engineering and biotechnology applications at Rensselaer Polytechnic Institute, Troy, NY.
  
• - Publications and tips for dihedral angle calculation, bioinformatics data and scripts for collagen and amino acid side-chain predictions, work using atomic force microscopy, solid and solution state NMR, from Edmonton, Canada.
  
• - Archive of online course, with discussion lists, and summary of lecture notes from 1996 at Birkbeck, University of London, UK.
  
• - Provides articles and FAQ explaining cartoon depictions, atlas of tertiary arrangements of polypeptides within predicted crystal. Includes server for upload of PDB code, and software downloads from University of Leeds, UK.
  
• - Collection of individual databases on members of the steroid and thyroid hormone and their receptors from Georgetown University, Washington, DC.
  
• - 3 parts (Prediction of secondary structure, Membrane protein structure and Protein motifs) of chapter 1 (From Sequence to Structure) can be read for free
  
• - Produces neural network predictions of mucin type GalNAc O-glycosylation sites in mammalian glycoproteins. Maintained at the Center for Biological Sequence Analysis, Technical University of Denmark.
  
• - Overview of protein splicing, exteins and the intein database at New England Biolabs, Inc. Includes links to publications at the NCBI, National Library of Medicine, Maryland.
  
• - Protein alignments organised as a database of over 5000 protein domains organized into structural superfamilies, including references maintained by the Department of Biochemistry, University of Cambridge, UK.
  
• - Provides a database of proteins that acetylate histones, including links to active researchers in the field and related links.
  
• - Summarizes features of protein families, documentation to capture biological richness through links to home pages of workers in the field from FHCRC, Seattle, WA.
  
• - EPR spectrum of a tyrosyl radical provides information about rotational angle of phenoxyl ring. Database compiled to identify the responsible locus, maintained at the University of Essex, Colchester, England.
  
• - Functional and structural information, based on protein sequence, with link to nomenclature for the signaling cascade genes, maintained at the San Diego Supercomputer Center, CA.
  
• - e-HTPX project aims to facilitate crystallographic structure determination. Includes archives from meetings, login for developers, and links to collaborators, coordinated from the Daresbury Laboratory, Warrington, England.
  
• - Resources for coordination patterns, and estimating distance between metal and ligand at binding sites. Includes search and visualization interfaces, maintained by the Scripps Research Institute, La Jolla, CA.
  
• - Large scale attempt to determine topology, through collaborative internet based effort, maintained by Millennium Information, Inc., Cambridge, MA.
  
• - Abstract and movie to promote article from Department of Surgery, Universities of Queensland and Otago, Dunedin, New Zealand.
  
• - Modeling the packing of all 20 amino acid side-chains with one-another and with DNA - from Birkbeck and University Colleges, London.
  
• - News and discussion in the area of folding, synthesis, and tertiary topology prediction, run by David Yee from Paramount, CA.
  
• - PDB provides a text based format for archiving experimentally-determined, three dimensional structures, at the Brookhaven National Laboratory, with list of mirror sites worldwide.
  
• - A key for different proteins based on structural features, with keyword search and PDB data, and an entry viewer for download.
  
• - Resource for the deposition and validation of newly proposed structures, maintained by research group, within the European Bioinformatics Instutute, Hinxton, UK.
  
• - Devoted to the modeling of polypeptide structures, aiming to bridge the gap from organic to biochemistry for undergraduates at the University of Pittsburgh, Bradford, PA.
  
• - Information regarding histones, histone modifications and their biological roles, and related links.